HL_6AWC_021

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

6AWC|1|A|G|971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWC_021 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.3333

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6AWC|1|A|G|963
6AWC|1|A|A|964
6AWC|1|A|U|965
6AWC|1|A|G|966
6AWC|1|A|C|967
6AWC|1|A|A|968
6AWC|1|A|A|969
6AWC|1|A|C|970
6AWC|1|A|G|971
6AWC|1|A|C|972

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S9

Chain M

30S ribosomal protein S10