3D structure

PDB id
6AWD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex
Experimental method
ELECTRON MICROSCOPY
Resolution
8.1 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6AWD_003 not in the Motif Atlas
Homologous match to HL_5J7L_003
Geometric discrepancy: 0.3643
The information below is about HL_5J7L_003
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6AWD|1|A|G|158
6AWD|1|A|G|159
6AWD|1|A|A|160
6AWD|1|A|A|161
6AWD|1|A|A|162
6AWD|1|A|C|163

Current chains

Chain A
16S rRNA

Nearby chains

Chain W
30S ribosomal protein S20

Coloring options:


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