HL_6AWD_007

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_007 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.2515

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6AWD|1|A|U|296
6AWD|1|A|G|297
6AWD|1|A|A|298
6AWD|1|A|G|299
6AWD|1|A|A|300
6AWD|1|A|G|301

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S4

Chain H

30S ribosomal protein S5