3D structure

PDB id
6AWD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex
Experimental method
ELECTRON MICROSCOPY
Resolution
8.1 Å

Loop

Sequence
UGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6AWD_007 not in the Motif Atlas
Homologous match to HL_5J7L_007
Geometric discrepancy: 0.2515
The information below is about HL_5J7L_007
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6AWD|1|A|U|296
6AWD|1|A|G|297
6AWD|1|A|A|298
6AWD|1|A|G|299
6AWD|1|A|A|300
6AWD|1|A|G|301

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S4
Chain H
30S ribosomal protein S5

Coloring options:


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