HL_6AWD_013

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_013 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.3734

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6AWD|1|A|C|522
6AWD|1|A|A|523
6AWD|1|A|G|524
6AWD|1|A|C|525
6AWD|1|A|C|526
6AWD|1|A|G|527

Current chains

Chain A

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S12