HL_6AWD_018

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6AWD|1|A|C|841, 6AWD|1|A|U|842, 6AWD|1|A|U|843, 6AWD|1|A|G|844, 6AWD|1|A|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AWD_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3319

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6AWD|1|A|C|840
6AWD|1|A|C|841
6AWD|1|A|U|842
6AWD|1|A|U|843
6AWD|1|A|G|844
6AWD|1|A|A|845
6AWD|1|A|G|846

Current chains

Chain A

16S rRNA

Nearby chains

Chain 03

DNA-directed RNA polymerase subunit beta

Chain E

30S ribosomal protein S2

Chain U

30S ribosomal protein S18