3D structure

PDB id
6AWD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex
Experimental method
ELECTRON MICROSCOPY
Resolution
8.1 Å

Loop

Sequence
GAUCAGAAUGC
Length
11 nucleotides
Bulged bases
6AWD|1|A|U|1364
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6AWD_029 not in the Motif Atlas
Homologous match to HL_4LFB_030
Geometric discrepancy: 0.3102
The information below is about HL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6AWD|1|A|G|1356
6AWD|1|A|A|1357
6AWD|1|A|U|1358
6AWD|1|A|C|1359
6AWD|1|A|A|1360
6AWD|1|A|G|1361
6AWD|1|A|A|1362
6AWD|1|A|A|1363
6AWD|1|A|U|1364
6AWD|1|A|G|1365
6AWD|1|A|C|1366

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S9
Chain M
30S ribosomal protein S10
Chain Q
30S ribosomal protein S14

Coloring options:


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