HL_6AZ1_010
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCUGAGAAAUAG
- Length
- 12 nucleotides
- Bulged bases
- 6AZ1|1|1|A|446
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_010 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0915
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6AZ1|1|1|C|436
6AZ1|1|1|C|437
6AZ1|1|1|U|438
6AZ1|1|1|G|439
6AZ1|1|1|A|440
6AZ1|1|1|G|441
6AZ1|1|1|A|442
6AZ1|1|1|A|443
6AZ1|1|1|A|444
6AZ1|1|1|U|445
6AZ1|1|1|A|446
6AZ1|1|1|G|447
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain E
- ribosomal protein S4e
- Chain G
- ribosomal protein S6e
- Chain K
- ribosomal protein S8e
- Chain Z
- ribosomal protein S24e
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