HL_6AZ1_015

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CACCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_015 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.1322

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6AZ1|1|1|C|618
6AZ1|1|1|A|619
6AZ1|1|1|C|620
6AZ1|1|1|C|621
6AZ1|1|1|C|622
6AZ1|1|1|G|623

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain 5

mRNA

Chain P

ribosomal protein S12