HL_6AZ1_019

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUG

Length

4 nucleotides

Bulged bases

6AZ1|1|1|U|882

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_019 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.2874

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

6AZ1|1|1|C|878
6AZ1|1|1|A|879
6AZ1|1|1|U|882
6AZ1|1|1|G|883

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain E

ribosomal protein S4e

Chain Z

ribosomal protein S24e