HL_6AZ1_020
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUCUAUUGGAGAUUAUGGAGC
- Length
- 22 nucleotides
- Bulged bases
- 6AZ1|1|1|G|965
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_020 not in the Motif Atlas
- Geometric match to HL_8VTW_010
- Geometric discrepancy: 0.0777
- The information below is about HL_8VTW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_71121.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6AZ1|1|1|G|957
6AZ1|1|1|G|958
6AZ1|1|1|U|959
6AZ1|1|1|C|960
6AZ1|1|1|U|961
6AZ1|1|1|A|962
6AZ1|1|1|U|963
6AZ1|1|1|U|964
6AZ1|1|1|G|965
6AZ1|1|1|G|966
6AZ1|1|1|A|967
6AZ1|1|1|G|968
6AZ1|1|1|A|969
6AZ1|1|1|U|970
6AZ1|1|1|U|971
6AZ1|1|1|A|972
6AZ1|1|1|U|973
6AZ1|1|1|G|974
6AZ1|1|1|G|975
6AZ1|1|1|A|976
6AZ1|1|1|G|977
6AZ1|1|1|C|978
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain K
- ribosomal protein S8e
- Chain U
- ribosomal protein S17
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