HL_6AZ1_021
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_021 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1583
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6AZ1|1|1|A|1147
6AZ1|1|1|G|1148
6AZ1|1|1|G|1149
6AZ1|1|1|U|1150
6AZ1|1|1|G|1151
6AZ1|1|1|A|1152
6AZ1|1|1|A|1153
6AZ1|1|1|A|1154
6AZ1|1|1|U|1155
6AZ1|1|1|U|1156
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 4
- Transfer RNA; tRNA
- Chain 5
- mRNA
- Chain O
- ribosomal protein S11
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