3D structure

PDB id
6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6AZ1_025 not in the Motif Atlas
Homologous match to HL_4V88_210
Geometric discrepancy: 0.0898
The information below is about HL_4V88_210
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6AZ1|1|1|C|1434
6AZ1|1|1|G|1435
6AZ1|1|1|A|1436
6AZ1|1|1|A|1437
6AZ1|1|1|A|1438
6AZ1|1|1|G|1439

Current chains

Chain 1
ribosomal RNA 18S

Nearby chains

Chain F
ribosomal protein S5
Chain J
ribosomal protein S8
Chain b
ribosomal protein S26e

Coloring options:


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