HL_6AZ1_026

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCGCAA(OMG)A

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_026 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2808

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6AZ1|1|1|U|1472
6AZ1|1|1|C|1473
6AZ1|1|1|G|1474
6AZ1|1|1|C|1475
6AZ1|1|1|A|1476
6AZ1|1|1|A|1477
6AZ1|1|1|OMG|1478
6AZ1|1|1|A|1479

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains