HL_6AZ1_027
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAC(C4J)(5MC)AACAC
- Length
- 10 nucleotides
- Bulged bases
- 6AZ1|1|1|A|1545, 6AZ1|1|1|A|1548
- QA status
- Modified nucleotides: C4J, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_027 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.121
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6AZ1|1|1|G|1540
6AZ1|1|1|A|1541
6AZ1|1|1|C|1542
6AZ1|1|1|C4J|1543
6AZ1|1|1|5MC|1544
6AZ1|1|1|A|1545
6AZ1|1|1|A|1546
6AZ1|1|1|C|1547
6AZ1|1|1|A|1548
6AZ1|1|1|C|1549
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 3
- Transfer RNA; tRNA
- Chain L
- ribosomal protein S9
- Chain M
- ribosomal protein S10
- Chain S
- ribosomal protein S14
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