HL_6AZ1_029

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_029 not in the Motif Atlas

Geometric match to HL_5J7L_027

Geometric discrepancy: 0.087

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6AZ1|1|1|A|1648
6AZ1|1|1|G|1649
6AZ1|1|1|U|1650
6AZ1|1|1|G|1651
6AZ1|1|1|A|1652
6AZ1|1|1|U|1653

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains

Chain B

ribosomal protein S2

Chain F

ribosomal protein S5