HL_6AZ1_035
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUGCAAUUA(OMU)U
- Length
- 12 nucleotides
- Bulged bases
- 6AZ1|1|1|A|1978
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_035 not in the Motif Atlas
- Geometric match to HL_4V88_219
- Geometric discrepancy: 0.1542
- The information below is about HL_4V88_219
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6AZ1|1|1|A|1969
6AZ1|1|1|U|1970
6AZ1|1|1|U|1971
6AZ1|1|1|G|1972
6AZ1|1|1|C|1973
6AZ1|1|1|A|1974
6AZ1|1|1|A|1975
6AZ1|1|1|U|1976
6AZ1|1|1|U|1977
6AZ1|1|1|A|1978
6AZ1|1|1|OMU|1979
6AZ1|1|1|U|1980
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain R
- ribosomal protein S13
- Chain S
- ribosomal protein S14
- Chain W
- ribosomal protein S19
- Chain X
- ribosomal protein S19e
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