HL_6AZ1_037

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

6AZ1|1|1|G|2183

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_037 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.1286

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6AZ1|1|1|G|2181
6AZ1|1|1|U|2182
6AZ1|1|1|G|2183
6AZ1|1|1|MA6|2184
6AZ1|1|1|MA6|2185
6AZ1|1|1|C|2186

Current chains

Chain 1

ribosomal RNA 18S

Nearby chains