HL_6AZ1_039

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUGAA(MIA)AU

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_039 not in the Motif Atlas

Homologous match to HL_4V9I_039

Geometric discrepancy: 0.1134

The information below is about HL_4V9I_039

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6AZ1|1|2|A|31
6AZ1|1|2|U|32
6AZ1|1|2|U|33
6AZ1|1|2|G|34
6AZ1|1|2|A|35
6AZ1|1|2|A|36
6AZ1|1|2|MIA|37
6AZ1|1|2|A|38
6AZ1|1|2|U|39

Current chains

Chain 2

tRNA-Phe

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain 5

mRNA

Chain P

ribosomal protein S12

Chain e

ribosomal protein S30e