HL_6AZ1_043

3D structure

PDB id

6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6AZ1_043 not in the Motif Atlas

Homologous match to HL_6PMO_005

Geometric discrepancy: 0.1649

The information below is about HL_6PMO_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

143

Unit IDs

6AZ1|1|3|G|53
6AZ1|1|3|U|54
6AZ1|1|3|U|55
6AZ1|1|3|C|56
6AZ1|1|3|A|57
6AZ1|1|3|A|58
6AZ1|1|3|A|59
6AZ1|1|3|U|60
6AZ1|1|3|C|61

Current chains

Chain 3

P-site tRNA

Nearby chains