HL_6AZ1_050
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6AZ1_050 not in the Motif Atlas
- Homologous match to HL_7OSM_116
- Geometric discrepancy: 0.3691
- The information below is about HL_7OSM_116
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6AZ1|1|4|A|31
6AZ1|1|4|U|32
6AZ1|1|4|U|33
6AZ1|1|4|G|34
6AZ1|1|4|A|35
6AZ1|1|4|A|36
6AZ1|1|4|A|37
6AZ1|1|4|A|38
6AZ1|1|4|U|39
Current chains
- Chain 4
- E-site tRNA
Nearby chains
- Chain 1
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- Transfer RNA; tRNA
- Chain 5
- mRNA
- Chain H
- ribosomal protein S7
- Chain O
- ribosomal protein S11
- Chain d
- ribosomal protein S28e
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