HL_6B4V_006
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGUAAUGGCC
- Length
- 11 nucleotides
- Bulged bases
- 6B4V|1|A|G|266
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6B4V_006 not in the Motif Atlas
- Geometric match to HL_3FOZ_004
- Geometric discrepancy: 0.3913
- The information below is about HL_3FOZ_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_45175.1
- Basepair signature
- cWW-cWS-F-F
- Number of instances in this motif group
- 5
Unit IDs
6B4V|1|A|G|258
6B4V|1|A|G|259
6B4V|1|A|G|260
6B4V|1|A|U|261
6B4V|1|A|A|262
6B4V|1|A|A|263
6B4V|1|A|U|264
6B4V|1|A|G|265
6B4V|1|A|G|266
6B4V|1|A|C|267
6B4V|1|A|C|268
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain CB
- 30S ribosomal protein S20
- Chain ZA
- 30S ribosomal protein S17
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