HL_6B4V_014

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.09

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6B4V|1|A|G|617
6B4V|1|A|C|618
6B4V|1|A|U|619
6B4V|1|A|C|620
6B4V|1|A|A|621
6B4V|1|A|A|622
6B4V|1|A|C|623

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain MA

30S ribosomal protein S4

Chain YA

30S ribosomal protein S16