HL_6B4V_024

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6B4V|1|A|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_024 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1569

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

6B4V|1|A|G|1089
6B4V|1|A|U|1090
6B4V|1|A|U|1091
6B4V|1|A|A|1092
6B4V|1|A|A|1093
6B4V|1|A|G|1094
6B4V|1|A|U|1095
6B4V|1|A|C|1096

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain PA

30S ribosomal protein S7