HL_6B4V_063

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

6B4V|1|B|G|1325, 6B4V|1|B|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_063 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.1293

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6B4V|1|B|G|1324
6B4V|1|B|G|1325
6B4V|1|B|U|1326
6B4V|1|B|C|1327
6B4V|1|B|G|1328
6B4V|1|B|U|1329
6B4V|1|B|C|1330

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22