HL_6B4V_067

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6B4V|1|B|C|1493, 6B4V|1|B|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_067 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.0895

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6B4V|1|B|G|1492
6B4V|1|B|C|1493
6B4V|1|B|A|1494
6B4V|1|B|A|1495
6B4V|1|B|A|1496
6B4V|1|B|U|1497
6B4V|1|B|C|1498

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L2