HL_6B4V_099
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGCGACC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6B4V_099 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.3362
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_45359.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6B4V|1|C|G|85
6B4V|1|C|G|86
6B4V|1|C|G|87
6B4V|1|C|C|88
6B4V|1|C|G|89|||A
6B4V|1|C|A|89|||B
6B4V|1|C|C|90
6B4V|1|C|C|91
Current chains
- Chain C
- 5S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L30
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
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