HL_6B4V_107

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGUAAUGGCC

Length

11 nucleotides

Bulged bases

6B4V|1|EB|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_107 not in the Motif Atlas

Geometric match to HL_3FOZ_004

Geometric discrepancy: 0.3956

The information below is about HL_3FOZ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6B4V|1|EB|G|258
6B4V|1|EB|G|259
6B4V|1|EB|G|260
6B4V|1|EB|U|261
6B4V|1|EB|A|262
6B4V|1|EB|A|263
6B4V|1|EB|U|264
6B4V|1|EB|G|265
6B4V|1|EB|G|266
6B4V|1|EB|C|267
6B4V|1|EB|C|268

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S17

Chain GD

30S ribosomal protein S20