HL_6B4V_113

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCCCGAGGAGGGG

Length

13 nucleotides

Bulged bases

6B4V|1|EB|G|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_113 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3699

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6B4V|1|EB|C|455
6B4V|1|EB|C|456
6B4V|1|EB|C|457
6B4V|1|EB|C|458
6B4V|1|EB|G|464
6B4V|1|EB|A|465
6B4V|1|EB|G|466
6B4V|1|EB|G|467
6B4V|1|EB|A|468
6B4V|1|EB|G|474
6B4V|1|EB|G|475
6B4V|1|EB|G|476
6B4V|1|EB|G|477

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S16