HL_6B4V_118
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6B4V|1|EB|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6B4V_118 not in the Motif Atlas
- Homologous match to HL_6CZR_088
- Geometric discrepancy: 0.127
- The information below is about HL_6CZR_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6B4V|1|EB|G|786
6B4V|1|EB|A|787
6B4V|1|EB|U|788
6B4V|1|EB|U|789
6B4V|1|EB|A|790
6B4V|1|EB|G|791
6B4V|1|EB|A|792
6B4V|1|EB|U|793
6B4V|1|EB|A|794
6B4V|1|EB|C|795
6B4V|1|EB|C|796
Current chains
- Chain EB
- 16S ribosomal RNA
Nearby chains
- Chain FB
- Large subunit ribosomal RNA; LSU rRNA
- Chain HB
- Transfer RNA; tRNA
- Chain LC
- mRNA
- Chain MC
- Transfer RNA; tRNA
- Chain XC
- 30S ribosomal protein S11
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