HL_6B4V_152

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

6B4V|1|FB|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_152 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.3111

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6B4V|1|FB|C|641
6B4V|1|FB|G|642
6B4V|1|FB|A|643
6B4V|1|FB|A|644
6B4V|1|FB|C|645
6B4V|1|FB|A|646
6B4V|1|FB|G|647

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L33

Chain JC

50S ribosomal protein L35

Chain QB

50S ribosomal protein L15