HL_6B4V_163

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_163 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.0973

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6B4V|1|FB|G|1281
6B4V|1|FB|U|1282
6B4V|1|FB|G|1283
6B4V|1|FB|A|1284
6B4V|1|FB|G|1285
6B4V|1|FB|A|1286
6B4V|1|FB|A|1287
6B4V|1|FB|U|1288
6B4V|1|FB|C|1289

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain SB

50S ribosomal protein L17

Chain XB

50S ribosomal protein L22