HL_6B4V_182

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

6B4V|1|FB|G|2210, 6B4V|1|FB|G|2211, 6B4V|1|FB|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_182 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.5214

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

6B4V|1|FB|C|2209
6B4V|1|FB|G|2210
6B4V|1|FB|G|2211
6B4V|1|FB|A|2212
6B4V|1|FB|U|2213
6B4V|1|FB|G|2215

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L28

Chain IB

50S ribosomal protein L2

Chain NB

50S ribosomal protein L9