HL_6B4V_184

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6B4V|1|FB|A|2268, 6B4V|1|FB|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_184 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0831

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6B4V|1|FB|C|2264
6B4V|1|FB|U|2265
6B4V|1|FB|A|2266
6B4V|1|FB|A|2267
6B4V|1|FB|A|2268
6B4V|1|FB|A|2269
6B4V|1|FB|G|2270
6B4V|1|FB|G|2271
6B4V|1|FB|U|2272
6B4V|1|FB|A|2273
6B4V|1|FB|A|2274
6B4V|1|FB|C|2275
6B4V|1|FB|G|2276

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L27

Chain RB

50S ribosomal protein L16