HL_6B4V_187

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_187 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0829

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6B4V|1|FB|C|2355
6B4V|1|FB|C|2356
6B4V|1|FB|U|2357
6B4V|1|FB|G|2358
6B4V|1|FB|C|2359
6B4V|1|FB|A|2360
6B4V|1|FB|A|2361
6B4V|1|FB|G|2362

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L27

Chain JC

50S ribosomal protein L35

Chain QB

50S ribosomal protein L15