HL_6B4V_189

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

6B4V|1|FB|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_189 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1646

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6B4V|1|FB|C|2404
6B4V|1|FB|G|2405
6B4V|1|FB|U|2406
6B4V|1|FB|G|2407
6B4V|1|FB|U|2408
6B4V|1|FB|G|2409
6B4V|1|FB|G|2410
6B4V|1|FB|A|2411
6B4V|1|FB|A|2412
6B4V|1|FB|G|2413

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L28

Chain QB

50S ribosomal protein L15