HL_6B4V_204
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 6B4V|1|IA|U|33
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6B4V_204 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.1092
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6B4V|1|IA|G|31
6B4V|1|IA|5MC|32
6B4V|1|IA|U|33
6B4V|1|IA|C|34
6B4V|1|IA|A|35
6B4V|1|IA|U|36
6B4V|1|IA|A|37
6B4V|1|IA|A|38
6B4V|1|IA|C|39
Current chains
- Chain IA
- tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Transfer RNA; tRNA
- Chain HA
- mRNA
- Chain JA
- Peptide chain release factor 1
- Chain RA
- 30S ribosomal protein S9
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