HL_6B4V_205
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGG(5MU)(PSU)CAAAUCCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6B4V_205 not in the Motif Atlas
- Homologous match to HL_5EL4_223
- Geometric discrepancy: 0.5693
- The information below is about HL_5EL4_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23827.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6B4V|1|IA|C|51
6B4V|1|IA|G|52
6B4V|1|IA|G|53
6B4V|1|IA|5MU|54
6B4V|1|IA|PSU|55
6B4V|1|IA|C|56
6B4V|1|IA|A|57
6B4V|1|IA|A|58
6B4V|1|IA|A|59
6B4V|1|IA|U|60
6B4V|1|IA|C|61
6B4V|1|IA|C|62
6B4V|1|IA|G|63
Current chains
- Chain IA
- tRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S ribosomal protein L5
- Chain N
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L27
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