HL_6B4V_209

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGCUUUGCC

Length

9 nucleotides

Bulged bases

6B4V|1|A|C|201, 6B4V|1|A|U|208, 6B4V|1|A|U|209, 6B4V|1|A|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_209 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.4391

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

6B4V|1|A|G|199
6B4V|1|A|G|200
6B4V|1|A|C|201
6B4V|1|A|U|208
6B4V|1|A|U|209
6B4V|1|A|U|210
6B4V|1|A|G|216
6B4V|1|A|C|217
6B4V|1|A|C|218

Current chains

Chain A

16S ribosomal RNA

Nearby chains