HL_6B4V_212

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGUCUCCU

Length

9 nucleotides

Bulged bases

6B4V|1|A|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_212 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3692

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6B4V|1|A|G|836
6B4V|1|A|G|837
6B4V|1|A|G|838
6B4V|1|A|U|841
6B4V|1|A|C|842
6B4V|1|A|U|843
6B4V|1|A|C|848
6B4V|1|A|C|849
6B4V|1|A|U|850

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S18

Chain KA

30S ribosomal protein S2

Chain OA

30S ribosomal protein S6