HL_6B4V_219

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGG(5MU)(PSU)CAAAUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_219 not in the Motif Atlas

Homologous match to HL_5EL4_250

Geometric discrepancy: 0.4428

The information below is about HL_5EL4_250

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

6B4V|1|D|C|51
6B4V|1|D|G|52
6B4V|1|D|G|53
6B4V|1|D|5MU|54
6B4V|1|D|PSU|55
6B4V|1|D|C|56
6B4V|1|D|A|57
6B4V|1|D|A|58
6B4V|1|D|A|59
6B4V|1|D|U|60
6B4V|1|D|C|61
6B4V|1|D|C|62
6B4V|1|D|G|63

Current chains

Chain D

tRNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA