HL_6B4V_227

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

G(PSU)AAC(5MU)A(PSU)AA(4OC)

Length

11 nucleotides

Bulged bases

6B4V|1|FB|A|1913

QA status

Modified nucleotides: PSU, 5MU, 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_227 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.3571

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6B4V|1|FB|G|1910
6B4V|1|FB|PSU|1911
6B4V|1|FB|A|1912
6B4V|1|FB|A|1913
6B4V|1|FB|C|1914
6B4V|1|FB|5MU|1915
6B4V|1|FB|A|1916
6B4V|1|FB|PSU|1917
6B4V|1|FB|A|1918
6B4V|1|FB|A|1919
6B4V|1|FB|4OC|1920

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain EB

Small subunit ribosomal RNA; SSU rRNA

Chain MC

Transfer RNA; tRNA

Chain NC

Peptide chain release factor 1