HL_6B4V_232

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6B4V|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_232 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1774

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_36455.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6B4V|1|A|G|259
6B4V|1|A|G|260
6B4V|1|A|U|261
6B4V|1|A|A|262
6B4V|1|A|A|263
6B4V|1|A|U|264
6B4V|1|A|G|265
6B4V|1|A|G|266
6B4V|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S20

Chain ZA

30S ribosomal protein S17