HL_6B4V_240

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCGAGGAGG

Length

9 nucleotides

Bulged bases

6B4V|1|EB|G|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6B4V_240 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.3998

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6B4V|1|EB|C|457
6B4V|1|EB|C|458
6B4V|1|EB|G|464
6B4V|1|EB|A|465
6B4V|1|EB|G|466
6B4V|1|EB|G|467
6B4V|1|EB|A|468
6B4V|1|EB|G|474
6B4V|1|EB|G|475

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S16