HL_6BOH_014

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1252

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6BOH|1|A|G|617
6BOH|1|A|C|618
6BOH|1|A|U|619
6BOH|1|A|C|620
6BOH|1|A|A|621
6BOH|1|A|A|622
6BOH|1|A|C|623

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain NA

50S ribosomal protein S4

Chain ZA

30S ribosomal protein S16