3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGCAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6BOH_027 not in the Motif Atlas
Homologous match to HL_4LFB_028
Geometric discrepancy: 0.2444
The information below is about HL_4LFB_028
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6BOH|1|A|G|1265
6BOH|1|A|G|1266
6BOH|1|A|C|1267
6BOH|1|A|A|1268
6BOH|1|A|A|1269
6BOH|1|A|C|1270

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain CB
30S ribosomal protein S19
Chain EB
30S ribosomal protein Thx
Chain WA
30S ribosomal protein S13

Coloring options:


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