HL_6BOH_086

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6BOH|1|B|A|2268, 6BOH|1|B|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_086 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0932

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6BOH|1|B|C|2264
6BOH|1|B|U|2265
6BOH|1|B|A|2266
6BOH|1|B|A|2267
6BOH|1|B|A|2268
6BOH|1|B|A|2269
6BOH|1|B|G|2270
6BOH|1|B|G|2271
6BOH|1|B|U|2272
6BOH|1|B|A|2273
6BOH|1|B|A|2274
6BOH|1|B|C|2275
6BOH|1|B|G|2276

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27