HL_6BOH_087

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_087 not in the Motif Atlas

Geometric match to HL_3SKI_003

Geometric discrepancy: 0.27

The information below is about HL_3SKI_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

6BOH|1|B|G|2302
6BOH|1|B|G|2303
6BOH|1|B|G|2304
6BOH|1|B|A|2305
6BOH|1|B|C|2306
6BOH|1|B|G|2307
6BOH|1|B|G|2308
6BOH|1|B|A|2309
6BOH|1|B|A|2310
6BOH|1|B|A|2311
6BOH|1|B|U|2312
6BOH|1|B|C|2313
6BOH|1|B|C|2314

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain H

50S ribosomal protein L5