HL_6BOH_105
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- G(5MC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6BOH_105 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.4285
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6BOH|1|D|G|31
6BOH|1|D|5MC|32
6BOH|1|D|U|33
6BOH|1|D|C|34
6BOH|1|D|A|35
6BOH|1|D|U|36
6BOH|1|D|A|37
6BOH|1|D|A|38
6BOH|1|D|C|39
Current chains
- Chain D
- tRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain HA
- mRNA
- Chain IA
- Transfer RNA; tRNA
- Chain QA
- 30S ribosomal protein S7
- Chain UA
- 30S ribosomal protein S11
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