HL_6BOH_147

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

6BOH|1|GB|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_147 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.1113

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6BOH|1|GB|U|305
6BOH|1|GB|U|306
6BOH|1|GB|G|307
6BOH|1|GB|G|308
6BOH|1|GB|G|309
6BOH|1|GB|A|310
6BOH|1|GB|A|311
6BOH|1|GB|G|312

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L24