HL_6BOH_158

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

6BOH|1|GB|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6BOH_158 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.2778

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6BOH|1|GB|C|641
6BOH|1|GB|G|642
6BOH|1|GB|A|643
6BOH|1|GB|A|644
6BOH|1|GB|C|645
6BOH|1|GB|A|646
6BOH|1|GB|G|647

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain IC

50S ribosomal protein L33

Chain KC

50S ribosomal protein L35

Chain RB

50S ribosomal protein L15